Williams AL, Genovese G, Dyer T, et al. for the T2D-GENES Consortium. Non-crossover gene conversions show strong allelic bias and unexpected clustering in humans. Under review, 2014.

The SIGMA Type 2 Diabetes Consortium: Williams AL, Jacobs SBR, Moreno-Macías H, et al.  Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature 506:97-101, Feb 2014.
Led the genetics analysis and wrote the genetics portions of paper.

The 1000 Genomes Project ConsortiumAn integrated map of genetic variation from 1,092 human genomes. Nature 491:56-65, Nov 2012.
Developed HAPMIX extension and applied it to the Latino populations.

Williams AL, Patterson N, Glessner J, Hakonarson H, Reich D.  Phasing Many Thousands of Genotyped Samples.  Am J Hum Genet, 91:238-51, Aug 2012.

Fejerman L, Chen GK, Eng C, Huntsman S, Hu D, Williams A, Pasaniuc B, John EM, Via M, Gignoux C, Ingles S, Monroe KR, Kolonel LN, Torres-Mejía G, Pérez-Stable EJ, Burchard EG, Henderson BE, Haiman CA, Ziv E. Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas. Hum Mol Genet, 21:1907-17, Apr 2012.

Williams AL, Housman DE, Rinard MC, Gifford DK.  Rapid Haplotype Inference for Nuclear Families. Genome Biol, 11:R108, Oct 2010.

Williams A, Thies W, Ernst MD.  Static Deadlock Detection for Java Libraries.  European Conference on Object-Oriented Programming (ECOOP).  Glasgow, Scotland, UK. Jul 2005.

Williams A, Barrus S, Morley K, Shirley P.  An efficient and robust ray-box intersection algorithm.  Journal of Graphics Tools, 10:49-54, Jun 2005.